IL_8VUP_075

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8VUP|1|1|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_075 not in the Motif Atlas

Geometric match to IL_8CRE_100

Geometric discrepancy: 0.1349

The information below is about IL_8CRE_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VUP|1|1|U|2081
8VUP|1|1|A|2082
8VUP|1|1|G|2083
*
8VUP|1|1|U|2236
8VUP|1|1|G|2237
8VUP|1|1|G|2238
8VUP|1|1|G|2239

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain B

50S ribosomal protein L2

Chain X

50S ribosomal protein L28