Loop IL_8VUP

3D structure

PDB id: 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: GGAGGCUUUGAAGUGUGGA*UCUGCAUGGAGCCGACCUUGAAAUAC
Length: 45 nucleotides
Bulged bases: 8VUP|1|1|U|2132, 8VUP|1|1|U|2166, 8VUP|1|1|U|2172
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8VUP|1|1|G|2124
8VUP|1|1|G|2125
8VUP|1|1|A|2126
8VUP|1|1|G|2127
8VUP|1|1|G|2128
8VUP|1|1|C|2129
8VUP|1|1|U|2130
8VUP|1|1|U|2131
8VUP|1|1|U|2132
8VUP|1|1|G|2133
8VUP|1|1|A|2134
8VUP|1|1|A|2135
8VUP|1|1|G|2136
8VUP|1|1|U|2137
8VUP|1|1|G|2138
8VUP|1|1|U|2139
8VUP|1|1|G|2140
8VUP|1|1|G|2141
8VUP|1|1|A|2142
*
8VUP|1|1|U|2149
8VUP|1|1|C|2150
8VUP|1|1|U|2151
8VUP|1|1|G|2152
8VUP|1|1|C|2153
8VUP|1|1|A|2154
8VUP|1|1|U|2155
8VUP|1|1|G|2156
8VUP|1|1|G|2157
8VUP|1|1|A|2158
8VUP|1|1|G|2159
8VUP|1|1|C|2160
8VUP|1|1|C|2161
8VUP|1|1|G|2162
8VUP|1|1|A|2163
8VUP|1|1|C|2164
8VUP|1|1|C|2165
8VUP|1|1|U|2166
8VUP|1|1|U|2167
8VUP|1|1|G|2168
8VUP|1|1|A|2169
8VUP|1|1|A|2170
8VUP|1|1|A|2171
8VUP|1|1|U|2172
8VUP|1|1|A|2173
8VUP|1|1|C|2174

Current chains

Chain 1: 23S ribosomal RNA

Nearby chains

Chain 5: Transfer RNA; tRNA
Chain A: Large ribosomal subunit protein uL1
Chain p: Small ribosomal subunit protein uS11

IL_8VUP_080