IL_8VUP_098

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

8VUP|1|1|C|2712, 8VUP|1|1|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_098 not in the Motif Atlas

Geometric match to IL_4WF9_103

Geometric discrepancy: 0.1171

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8VUP|1|1|U|2695
8VUP|1|1|U|2696
*
8VUP|1|1|A|2711
8VUP|1|1|C|2712
8VUP|1|1|U|2713
8VUP|1|1|G|2714

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17

Chain P

50S ribosomal protein L19