IL_8VUP_100
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGAAG*CGUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VUP_100 not in the Motif Atlas
- Geometric match to IL_5J7L_351
- Geometric discrepancy: 0.1654
- The information below is about IL_5J7L_351
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29471.1
- Basepair signature
- cWW-cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8VUP|1|1|C|2806
8VUP|1|1|U|2807
8VUP|1|1|G|2808
8VUP|1|1|A|2809
8VUP|1|1|A|2810
8VUP|1|1|G|2811
*
8VUP|1|1|C|2889
8VUP|1|1|G|2890
8VUP|1|1|U|2891
8VUP|1|1|G|2892
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain b
- 50S ribosomal protein L32
Coloring options: