IL_8VUP_113

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VUP|1|2|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_113 not in the Motif Atlas

Geometric match to IL_8P9A_383

Geometric discrepancy: 0.2714

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8VUP|1|2|G|147
8VUP|1|2|G|148
8VUP|1|2|A|149
8VUP|1|2|U|150
8VUP|1|2|A|151
8VUP|1|2|A|152
8VUP|1|2|C|153
*
8VUP|1|2|G|168
8VUP|1|2|C|169
8VUP|1|2|U|170
8VUP|1|2|A|171
8VUP|1|2|A|172
8VUP|1|2|U|173
8VUP|1|2|A|174
8VUP|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20