IL_8VUP_125

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_125 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.2808

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8VUP|1|2|U|594
8VUP|1|2|A|595
8VUP|1|2|A|596
*
8VUP|1|2|U|644
8VUP|1|2|G|645

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain v

30S ribosomal protein S17