IL_8VUP_126

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

8VUP|1|2|U|641

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_126 not in the Motif Atlas

Geometric match to IL_6M0X_001

Geometric discrepancy: 0.3077

The information below is about IL_6M0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65498.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8VUP|1|2|G|597
8VUP|1|2|U|598
8VUP|1|2|C|599
*
8VUP|1|2|G|639
8VUP|1|2|A|640
8VUP|1|2|U|641
8VUP|1|2|A|642
8VUP|1|2|C|643

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain v

30S ribosomal protein S17