IL_8VUP_128
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GA*UGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VUP_128 not in the Motif Atlas
- Geometric match to IL_5J7L_031
- Geometric discrepancy: 0.1867
- The information below is about IL_5J7L_031
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
8VUP|1|2|G|654
8VUP|1|2|A|655
*
8VUP|1|2|U|751
8VUP|1|2|G|752
8VUP|1|2|A|753
8VUP|1|2|C|754
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S8
- Chain t
- 30S ribosomal protein S15
Coloring options: