IL_8VUP_129

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGUAGAG*UGGACGAA

Length

16 nucleotides

Bulged bases

8VUP|1|2|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|U|659
8VUP|1|2|C|660
8VUP|1|2|G|661
8VUP|1|2|U|662
8VUP|1|2|A|663
8VUP|1|2|G|664
8VUP|1|2|A|665
8VUP|1|2|G|666
*
8VUP|1|2|U|740
8VUP|1|2|G|741
8VUP|1|2|G|742
8VUP|1|2|A|743
8VUP|1|2|C|744
8VUP|1|2|G|745
8VUP|1|2|A|746
8VUP|1|2|A|747

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S6, non-modified isoform

Chain t

30S ribosomal protein S15

Chain w

30S ribosomal protein S18

Chain z

Small ribosomal subunit protein bS21