IL_8VUP_130

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|A|673
8VUP|1|2|G|674
8VUP|1|2|A|675
8VUP|1|2|A|676
8VUP|1|2|U|677
8VUP|1|2|U|678
*
8VUP|1|2|A|712
8VUP|1|2|G|713
8VUP|1|2|G|714
8VUP|1|2|A|715
8VUP|1|2|A|716
8VUP|1|2|U|717

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain k

30S ribosomal protein S6, non-modified isoform

Chain p

Small ribosomal subunit protein uS11

Chain w

30S ribosomal protein S18

Chain z

Small ribosomal subunit protein bS21