IL_8VUP_133

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_133 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.1393

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8VUP|1|2|C|779
8VUP|1|2|A|780
8VUP|1|2|A|781
8VUP|1|2|A|782
8VUP|1|2|C|783
*
8VUP|1|2|G|799
8VUP|1|2|G|800
8VUP|1|2|U|801
8VUP|1|2|A|802
8VUP|1|2|G|803

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

Small ribosomal subunit protein uS11

Chain z

Small ribosomal subunit protein bS21