IL_8VUP_140

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGUUU*GAAUGUGCCUUCGGGAAC

Length

25 nucleotides

Bulged bases

8VUP|1|2|U|1029, 8VUP|1|2|U|1030, 8VUP|1|2|C|1031, 8VUP|1|2|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|G|1003
8VUP|1|2|A|1004
8VUP|1|2|A|1005
8VUP|1|2|G|1006
8VUP|1|2|U|1007
8VUP|1|2|U|1008
8VUP|1|2|U|1009
*
8VUP|1|2|G|1020
8VUP|1|2|A|1021
8VUP|1|2|A|1022
8VUP|1|2|U|1023
8VUP|1|2|G|1024
8VUP|1|2|U|1025
8VUP|1|2|G|1026
8VUP|1|2|C|1027
8VUP|1|2|C|1028
8VUP|1|2|U|1029
8VUP|1|2|U|1030
8VUP|1|2|C|1031
8VUP|1|2|G|1032
8VUP|1|2|G|1033
8VUP|1|2|G|1034
8VUP|1|2|A|1035
8VUP|1|2|A|1036
8VUP|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

Small ribosomal subunit protein uS14