IL_8VUP_145
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VUP_145 not in the Motif Atlas
- Geometric match to IL_5J7L_050
- Geometric discrepancy: 0.1909
- The information below is about IL_5J7L_050
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
8VUP|1|2|G|1061
8VUP|1|2|U|1062
8VUP|1|2|C|1063
*
8VUP|1|2|G|1193
8VUP|1|2|U|1194
8VUP|1|2|C|1195
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS3
- Chain j
- 30S ribosomal protein S5
- Chain n
- Small ribosomal subunit protein uS9
- Chain o
- 30S ribosomal protein S10
- Chain s
- Small ribosomal subunit protein uS14
Coloring options: