IL_8VUP_149

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUACAAAG*CAUAAAGUG

Length

18 nucleotides

Bulged bases

8VUP|1|2|U|1286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|2|C|1245
8VUP|1|2|A|1246
8VUP|1|2|U|1247
8VUP|1|2|A|1248
8VUP|1|2|C|1249
8VUP|1|2|A|1250
8VUP|1|2|A|1251
8VUP|1|2|A|1252
8VUP|1|2|G|1253
*
8VUP|1|2|C|1284
8VUP|1|2|A|1285
8VUP|1|2|U|1286
8VUP|1|2|A|1287
8VUP|1|2|A|1288
8VUP|1|2|A|1289
8VUP|1|2|G|1290
8VUP|1|2|U|1291
8VUP|1|2|G|1292

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9

Chain o

30S ribosomal protein S10

Chain r

30S ribosomal protein S13

Chain s

Small ribosomal subunit protein uS14