IL_8VUP_155
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGUG*CAUGAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VUP_155 not in the Motif Atlas
- Geometric match to IL_4N0T_001
- Geometric discrepancy: 0.3624
- The information below is about IL_4N0T_001
- Detailed Annotation
- Double sheared; A in syn; two near cWW pairs
- Broad Annotation
- Double sheared; A in syn; two near cWW pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VUP|1|2|G|1416
8VUP|1|2|G|1417
8VUP|1|2|A|1418
8VUP|1|2|G|1419
8VUP|1|2|U|1420
8VUP|1|2|G|1421
*
8VUP|1|2|C|1479
8VUP|1|2|A|1480
8VUP|1|2|U|1481
8VUP|1|2|G|1482
8VUP|1|2|A|1483
8VUP|1|2|C|1484
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 50S ribosomal protein L14
- Chain q
- Small ribosomal subunit protein uS12
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