IL_8VV4_006
3D structure
- PDB id
- 8VV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VV4_006 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0791
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8VV4|1|1|G|188
8VV4|1|1|G|189
8VV4|1|1|A|190
8VV4|1|1|A|191
8VV4|1|1|C|192
8VV4|1|1|U|193
8VV4|1|1|G|194
*
8VV4|1|1|C|201
8VV4|1|1|U|202
8VV4|1|1|A|203
8VV4|1|1|A|204
8VV4|1|1|G|205
8VV4|1|1|U|206
8VV4|1|1|A|207
8VV4|1|1|C|208
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L28
- Chain d
- 50S ribosomal protein L34
- Chain e
- 50S ribosomal protein L35
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