IL_8VV4_050

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8VV4|1|1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_050 not in the Motif Atlas

Geometric match to IL_9DFE_054

Geometric discrepancy: 0.1064

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8VV4|1|1|C|1417
8VV4|1|1|G|1418
8VV4|1|1|A|1419
8VV4|1|1|A|1420
8VV4|1|1|G|1421
*
8VV4|1|1|C|1577
8VV4|1|1|U|1578
8VV4|1|1|A|1579
8VV4|1|1|A|1580
8VV4|1|1|G|1581

Current chains

Chain 1

23S ribosomal RNA

Nearby chains