IL_8VV4_132

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8VV4|1|2|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_132 not in the Motif Atlas

Geometric match to IL_8P9A_405

Geometric discrepancy: 0.2123

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8VV4|1|2|C|569
8VV4|1|2|G|570
8VV4|1|2|U|571
8VV4|1|2|A|572
8VV4|1|2|A|573
8VV4|1|2|A|574
8VV4|1|2|G|575
*
8VV4|1|2|C|880
8VV4|1|2|G|881

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17