IL_8VV4_159

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

8VV4|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VV4_159 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.2074

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8VV4|1|2|C|1158
8VV4|1|2|U|1159
8VV4|1|2|G|1160
8VV4|1|2|C|1161
*
8VV4|1|2|G|1175
8VV4|1|2|A|1176
8VV4|1|2|G|1177
8VV4|1|2|G|1178
8VV4|1|2|A|1179
8VV4|1|2|A|1180
8VV4|1|2|G|1181

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain n

Small ribosomal subunit protein uS9