IL_8VVJ_003

3D structure

PDB id

8VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of S. odontolytica ZTP riboswitch bound to m-1-pyridinyl-AICA

Experimental method

X-RAY DIFFRACTION

Resolution

2.15 Å

Loop

Sequence

UGAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVJ_003 not in the Motif Atlas

Geometric match to IL_4XWF_001

Geometric discrepancy: 0.0607

The information below is about IL_4XWF_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVJ|1|A|U|7||||4_655
8VVJ|1|A|G|8||||4_655
8VVJ|1|A|A|9||||4_655
8VVJ|1|A|C|10||||4_655
*
8VVJ|1|A|G|36||||4_655
8VVJ|1|A|G|37||||4_655
8VVJ|1|A|A|38||||4_655
8VVJ|1|A|G|39||||4_655

Current chains

Chain A

RNA (64-MER)

Nearby chains