IL_8VVP_016

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_016 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.352

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8VVP|1|WA|C|174
8VVP|1|WA|C|175
8VVP|1|WA|G|176
*
8VVP|1|WA|C|260
8VVP|1|WA|G|261
8VVP|1|WA|G|262
8VVP|1|WA|G|263

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain K

L13