IL_8VVP_017

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_017 not in the Motif Atlas

Geometric match to IL_8P9A_377

Geometric discrepancy: 0.2332

The information below is about IL_8P9A_377

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8VVP|1|WA|G|179
8VVP|1|WA|C|180
8VVP|1|WA|C|181
*
8VVP|1|WA|G|256
8VVP|1|WA|C|257

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain K

L13