IL_8VVP_041

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CCCG

Length

8 nucleotides

Bulged bases

8VVP|1|WA|C|739, 8VVP|1|WA|A|740, 8VVP|1|WA|C|928, 8VVP|1|WA|C|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_041 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.332

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8VVP|1|WA|C|738
8VVP|1|WA|C|739
8VVP|1|WA|A|740
8VVP|1|WA|G|741
*
8VVP|1|WA|C|927
8VVP|1|WA|C|928
8VVP|1|WA|C|929
8VVP|1|WA|G|930

Current chains

Chain WA

28S rRNA

Nearby chains

Chain L

eL14