IL_8VVP_060

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_060 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0954

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VVP|1|WA|C|1553
8VVP|1|WA|G|1554
8VVP|1|WA|A|1555
8VVP|1|WA|A|1556
8VVP|1|WA|G|1557
*
8VVP|1|WA|U|1574
8VVP|1|WA|G|1575
8VVP|1|WA|G|1576
8VVP|1|WA|A|1577
8VVP|1|WA|G|1578

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL3

Chain OA

eL43

Chain Q

eL19