IL_8VVP_067

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8VVP|1|WA|G|1726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_067 not in the Motif Atlas

Geometric match to IL_8CRE_040

Geometric discrepancy: 0.1119

The information below is about IL_8CRE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8VVP|1|WA|A|1725
8VVP|1|WA|G|1726
8VVP|1|WA|U|1727
*
8VVP|1|WA|A|1840
8VVP|1|WA|U|1841

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain F

uL30

Chain S

eL21