IL_8VVP_093

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8VVP|1|WA|A|2430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_093 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2815

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8VVP|1|WA|U|2417
8VVP|1|WA|G|2418
8VVP|1|WA|A|2419
8VVP|1|WA|A|2420
8VVP|1|WA|C|2421
*
8VVP|1|WA|G|2429
8VVP|1|WA|A|2430
8VVP|1|WA|A|2431

Current chains

Chain WA

28S rRNA

Nearby chains

Chain KA

eL39

Chain O

uL22

Chain Q

eL19