IL_8VVP_111

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8VVP|1|WA|G|3841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_111 not in the Motif Atlas

Geometric match to IL_8P9A_306

Geometric discrepancy: 0.088

The information below is about IL_8P9A_306

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8VVP|1|WA|A|2852
8VVP|1|WA|G|2853
8VVP|1|WA|U|2854
8VVP|1|WA|C|2855
8VVP|1|WA|G|2856
8VVP|1|WA|G|2857
*
8VVP|1|WA|C|3839
8VVP|1|WA|U|3840
8VVP|1|WA|G|3841
8VVP|1|WA|U|3842

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain U

L23