IL_8VVP_112
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8VVP|1|WA|U|2882
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_112 not in the Motif Atlas
- Geometric match to IL_8CRE_084
- Geometric discrepancy: 0.077
- The information below is about IL_8CRE_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VVP|1|WA|C|2869
8VVP|1|WA|G|2870
8VVP|1|WA|U|2871
8VVP|1|WA|A|2872
8VVP|1|WA|A|2873
8VVP|1|WA|C|2874
*
8VVP|1|WA|G|2879
8VVP|1|WA|G|2880
8VVP|1|WA|A|2881
8VVP|1|WA|U|2882
8VVP|1|WA|A|2883
8VVP|1|WA|A|2884
8VVP|1|WA|G|2885
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain MA
- eL41
- Chain OA
- eL43
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
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