IL_8VVP_115

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8VVP|1|WA|A|3830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_115 not in the Motif Atlas

Geometric match to IL_4V9F_064

Geometric discrepancy: 0.0957

The information below is about IL_4V9F_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVP|1|WA|C|3634
8VVP|1|WA|C|3635
*
8VVP|1|WA|G|3829
8VVP|1|WA|A|3830
8VVP|1|WA|G|3831

Current chains

Chain WA

28S rRNA

Nearby chains

Chain MA

eL41