IL_8VVP_116
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8VVP|1|WA|A|3665, 8VVP|1|WA|U|3681, 8VVP|1|WA|C|3685
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_116 not in the Motif Atlas
- Geometric match to IL_8P9A_311
- Geometric discrepancy: 0.0669
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VVP|1|WA|C|3662
8VVP|1|WA|G|3663
8VVP|1|WA|A|3664
8VVP|1|WA|A|3665
8VVP|1|WA|G|3666
8VVP|1|WA|G|3667
*
8VVP|1|WA|U|3679
8VVP|1|WA|G|3680
8VVP|1|WA|U|3681
8VVP|1|WA|U|3682
8VVP|1|WA|G|3683
8VVP|1|WA|A|3684
8VVP|1|WA|C|3685
8VVP|1|WA|G|3686
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL3
- Chain OA
- eL43
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
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