IL_8VVP_123
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8VVP|1|WA|A|3787, 8VVP|1|WA|C|3793, 8VVP|1|WA|C|3812
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_123 not in the Motif Atlas
- Geometric match to IL_8CRE_095
- Geometric discrepancy: 0.0955
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|WA|C|3783
8VVP|1|WA|C|3784
8VVP|1|WA|A|3785
8VVP|1|WA|A|3786
8VVP|1|WA|A|3787
8VVP|1|WA|U|3788
8VVP|1|WA|G|3789
8VVP|1|WA|C|3790
8VVP|1|WA|C|3791
8VVP|1|WA|U|3792
8VVP|1|WA|C|3793
8VVP|1|WA|G|3794
*
8VVP|1|WA|C|3810
8VVP|1|WA|G|3811
8VVP|1|WA|C|3812
8VVP|1|WA|G|3813
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain MA
- eL41
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: