IL_8VVP_129
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8VVP|1|WA|G|4086, 8VVP|1|WA|G|4088, 8VVP|1|WA|G|4089, 8VVP|1|WA|C|4164, 8VVP|1|WA|U|4165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_129 not in the Motif Atlas
- Geometric match to IL_8CRE_106
- Geometric discrepancy: 0.1673
- The information below is about IL_8CRE_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00555.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8VVP|1|WA|G|4084
8VVP|1|WA|U|4085
8VVP|1|WA|G|4086
8VVP|1|WA|A|4087
8VVP|1|WA|G|4088
8VVP|1|WA|G|4089
8VVP|1|WA|C|4090
*
8VVP|1|WA|G|4163
8VVP|1|WA|C|4164
8VVP|1|WA|U|4165
8VVP|1|WA|C|4166
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL3
- Chain G
- L7A
- Chain W
- uL23
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: