IL_8VVP_139

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8VVP|1|WA|U|4439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_139 not in the Motif Atlas

Geometric match to IL_8CRE_113

Geometric discrepancy: 0.1246

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8VVP|1|WA|G|4407
8VVP|1|WA|U|4408
8VVP|1|WA|G|4409
*
8VVP|1|WA|U|4437
8VVP|1|WA|U|4438
8VVP|1|WA|U|4439
8VVP|1|WA|U|4440
8VVP|1|WA|U|4441

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain I

L10