IL_8VVP_161

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

8VVP|1|WA|C|4759, 8VVP|1|WA|U|4760, 8VVP|1|WA|A|4766, 8VVP|1|WA|G|4872, 8VVP|1|WA|C|4873, 8VVP|1|WA|G|4875, 8VVP|1|WA|A|4878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|C|4758
8VVP|1|WA|C|4759
8VVP|1|WA|U|4760
8VVP|1|WA|C|4761
8VVP|1|WA|G|4762
8VVP|1|WA|G|4763
8VVP|1|WA|A|4764
8VVP|1|WA|U|4765
8VVP|1|WA|A|4766
8VVP|1|WA|G|4767
*
8VVP|1|WA|U|4871
8VVP|1|WA|G|4872
8VVP|1|WA|C|4873
8VVP|1|WA|G|4874
8VVP|1|WA|G|4875
8VVP|1|WA|A|4876
8VVP|1|WA|G|4877
8VVP|1|WA|A|4878
8VVP|1|WA|G|4879

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain H

L9

Chain L

eL14

Chain N

uL13

Chain R

L18a