IL_8VVP_201

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

8VVP|1|ZA|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_201 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VVP|1|ZA|U|487
8VVP|1|ZA|U|488
8VVP|1|ZA|A|489
*
8VVP|1|ZA|U|511
8VVP|1|ZA|A|512

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain HC

eukaryotic elongation factor 1A

Chain JB

S9

Chain UA

Transfer RNA; tRNA

Chain YB

S24