IL_8VVP_222

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_222 not in the Motif Atlas

Geometric match to IL_8CRE_433

Geometric discrepancy: 0.0802

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVP|1|ZA|G|928
8VVP|1|ZA|G|929
8VVP|1|ZA|C|930
8VVP|1|ZA|C|931
*
8VVP|1|ZA|G|1010
8VVP|1|ZA|A|1011
8VVP|1|ZA|A|1012
8VVP|1|ZA|U|1013

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BB

S3A

Chain BC

S27

Chain NB

uS15