IL_8VVP_239

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGACAGGAUUGACA*UUUCUCGAUUCCG

Length

28 nucleotides

Bulged bases

8VVP|1|ZA|G|1285, 8VVP|1|ZA|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|ZA|C|1279
8VVP|1|ZA|G|1280
8VVP|1|ZA|G|1281
8VVP|1|ZA|A|1282
8VVP|1|ZA|C|1283
8VVP|1|ZA|A|1284
8VVP|1|ZA|G|1285
8VVP|1|ZA|G|1286
8VVP|1|ZA|A|1287
8VVP|1|ZA|U|1288
8VVP|1|ZA|U|1289
8VVP|1|ZA|G|1290
8VVP|1|ZA|A|1291
8VVP|1|ZA|C|1292
8VVP|1|ZA|A|1293
*
8VVP|1|ZA|U|1306
8VVP|1|ZA|U|1307
8VVP|1|ZA|U|1308
8VVP|1|ZA|C|1309
8VVP|1|ZA|U|1310
8VVP|1|ZA|C|1311
8VVP|1|ZA|G|1312
8VVP|1|ZA|A|1313
8VVP|1|ZA|U|1314
8VVP|1|ZA|U|1315
8VVP|1|ZA|C|1316
8VVP|1|ZA|C|1317
8VVP|1|ZA|G|1318

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain KB

S10

Chain MB

S12