IL_8VVP_255

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8VVP|1|ZA|C|1701, 8VVP|1|ZA|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_255 not in the Motif Atlas

Geometric match to IL_4LFB_056

Geometric discrepancy: 0.0928

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8VVP|1|ZA|C|1700
8VVP|1|ZA|C|1701
8VVP|1|ZA|G|1702
*
8VVP|1|ZA|C|1833
8VVP|1|ZA|A|1834
8VVP|1|ZA|A|1835
8VVP|1|ZA|G|1836

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain SA

Transfer RNA; tRNA

Chain VA

mRNA