IL_8VVP_256
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_256 not in the Motif Atlas
- Geometric match to IL_8CRE_467
- Geometric discrepancy: 0.0795
- The information below is about IL_8CRE_467
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|ZA|G|1702
8VVP|1|ZA|C|1703
8VVP|1|ZA|C|1704
8VVP|1|ZA|C|1705
*
8VVP|1|ZA|G|1829
8VVP|1|ZA|U|1830
8VVP|1|ZA|A|1831
8VVP|1|ZA|A|1832
8VVP|1|ZA|C|1833
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain MA
- eL41
- Chain SA
- Transfer RNA; tRNA
- Chain VA
- mRNA
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: