IL_8VVP_258

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8VVP|1|ZA|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_258 not in the Motif Atlas

Geometric match to IL_7VYX_002

Geometric discrepancy: 0.384

The information below is about IL_7VYX_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVP|1|ZA|C|1708
8VVP|1|ZA|G|1709
8VVP|1|ZA|C|1710
8VVP|1|ZA|U|1711
*
8VVP|1|ZA|A|1822
8VVP|1|ZA|A|1823
8VVP|1|ZA|A|1824
8VVP|1|ZA|A|1825
8VVP|1|ZA|G|1826

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain UA

Transfer RNA; tRNA

Chain VA

mRNA

Chain WA

Large subunit ribosomal RNA; LSU rRNA

Chain XB

S23