IL_8VVP_262

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_262 not in the Motif Atlas

Geometric match to IL_8CRE_473

Geometric discrepancy: 0.0715

The information below is about IL_8CRE_473

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8VVP|1|ZA|U|1729
8VVP|1|ZA|U|1730
8VVP|1|ZA|A|1731
*
8VVP|1|ZA|U|1803
8VVP|1|ZA|U|1804
8VVP|1|ZA|G|1805

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain IB

S8

Chain U

L23

Chain WA

Large subunit ribosomal RNA; LSU rRNA