IL_8VVR_122

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8VVR|1|WA|A|3787, 8VVR|1|WA|C|3793, 8VVR|1|WA|C|3812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_122 not in the Motif Atlas

Geometric match to IL_8CRE_095

Geometric discrepancy: 0.1667

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8VVR|1|WA|C|3783
8VVR|1|WA|C|3784
8VVR|1|WA|A|3785
8VVR|1|WA|A|3786
8VVR|1|WA|A|3787
8VVR|1|WA|U|3788
8VVR|1|WA|G|3789
8VVR|1|WA|C|3790
8VVR|1|WA|C|3791
8VVR|1|WA|U|3792
8VVR|1|WA|C|3793
8VVR|1|WA|G|3794
*
8VVR|1|WA|C|3810
8VVR|1|WA|G|3811
8VVR|1|WA|C|3812
8VVR|1|WA|G|3813

Current chains

Chain WA

28S rRNA

Nearby chains

Chain MA

eL41

Chain ZA

Small subunit ribosomal RNA; SSU rRNA