IL_8VVR_177
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVR_177 not in the Motif Atlas
- Geometric match to IL_8CRE_125
- Geometric discrepancy: 0.1714
- The information below is about IL_8CRE_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8VVR|1|XA|G|71
8VVR|1|XA|U|72
8VVR|1|XA|U|73
8VVR|1|XA|A|74
8VVR|1|XA|G|75
8VVR|1|XA|U|76
8VVR|1|XA|A|77
8VVR|1|XA|C|78
*
8VVR|1|XA|G|98
8VVR|1|XA|G|99
8VVR|1|XA|A|100
8VVR|1|XA|A|101
8VVR|1|XA|U|102
8VVR|1|XA|A|103
8VVR|1|XA|C|104
Current chains
- Chain XA
- 5S rRNA
Nearby chains
- Chain D
- uL18
- Chain F
- uL30
- Chain I
- L10
- Chain R
- eL20
- Chain S
- eL21
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: