IL_8VVR_203

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

8VVR|1|ZA|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_203 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2592

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8VVR|1|ZA|A|529
8VVR|1|ZA|U|530
8VVR|1|ZA|A|531
*
8VVR|1|ZA|U|553
8VVR|1|ZA|A|554
8VVR|1|ZA|A|555
8VVR|1|ZA|U|556

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9