IL_8VVR_247

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8VVR|1|ZA|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_247 not in the Motif Atlas

Geometric match to IL_7D7W_002

Geometric discrepancy: 0.3599

The information below is about IL_7D7W_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8VVR|1|ZA|C|1412
8VVR|1|ZA|G|1413
*
8VVR|1|ZA|C|1427
8VVR|1|ZA|G|1428
8VVR|1|ZA|G|1429

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain QB

uS9

Chain TB

S19