IL_8VVS_007

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_007 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.1426

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8VVS|1|WA|C|26
8VVS|1|WA|C|27
*
8VVS|1|WA|G|55
8VVS|1|WA|A|56
8VVS|1|WA|G|57

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain IA

L37

Chain K

eL13

Chain M

eL15

Chain YA

5.8S ribosomal RNA; 5.8S rRNA