IL_8VVS_034

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8VVS|1|WA|C|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_034 not in the Motif Atlas

Geometric match to IL_3SN2_001

Geometric discrepancy: 0.2821

The information below is about IL_3SN2_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8VVS|1|WA|G|498
8VVS|1|WA|C|499
8VVS|1|WA|G|500
*
8VVS|1|WA|C|657
8VVS|1|WA|C|658

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4