IL_8VVS_040

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8VVS|1|WA|A|936, 8VVS|1|WA|G|937, 8VVS|1|WA|A|939, 8VVS|1|WA|C|941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|A|733
8VVS|1|WA|A|734
8VVS|1|WA|G|735
8VVS|1|WA|G|736
*
8VVS|1|WA|C|932
8VVS|1|WA|A|933
8VVS|1|WA|G|934
8VVS|1|WA|C|935
8VVS|1|WA|A|936
8VVS|1|WA|G|937
8VVS|1|WA|C|938
8VVS|1|WA|A|939
8VVS|1|WA|G|940
8VVS|1|WA|C|941
8VVS|1|WA|U|942

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain L

eL14

Chain R

eL20