IL_8VVS_060

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_060 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1294

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VVS|1|WA|C|1553
8VVS|1|WA|G|1554
8VVS|1|WA|A|1555
8VVS|1|WA|A|1556
8VVS|1|WA|G|1557
*
8VVS|1|WA|U|1574
8VVS|1|WA|G|1575
8VVS|1|WA|G|1576
8VVS|1|WA|A|1577
8VVS|1|WA|G|1578

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain OA

eL43

Chain Q

eL19