IL_8VVS_075

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_075 not in the Motif Atlas

Geometric match to IL_8CRE_412

Geometric discrepancy: 0.143

The information below is about IL_8CRE_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8VVS|1|WA|U|1863
8VVS|1|WA|U|1864
8VVS|1|WA|U|1865
*
8VVS|1|WA|A|1873
8VVS|1|WA|G|1874
8VVS|1|WA|A|1875

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain I

L10

Chain XA

5S ribosomal RNA; 5S rRNA